Barbanson Biotech

Bioinformatics consulting

Barbanson Biotech

Are you looking to pogress your project through bioinformatic software and analysis tailored to your project ?

Welcome to Barbanson Biotech, your starting point for custom data analysis.

I am a freelance bioinformatician and doctorate graduate from the Alexander van Oudenaarden group, specialised in single cell (epi-)genomics and transcriptomics analysis. During my doctorate I developed the open-source python package SingleCellMultiOmics which you can freely use for single cell sequencing analysis.

I have extensive experience with bulk and single cell sequencing data, specifically:

  • copy number analysis
  • variant calling
  • lineage Inference
  • epigenetics (DNA-methylation and histone modifications)

What can you expect from my custom analysis or consulting for your project ? Contact me for an introductory consult. Before our first meeting I will gain an overview of your data to check if quality and data type are suited to answer your questions. Based on this first overview and our first introductory consult I will make a detailed offer with a analysis plan specifing project milestones and goals.

Contact and company details

email: please enable javascript
phone: +31 630 970 701
KvK: 83551204

Recent publications

Integration of multiple lineage measurements from the same cell reconstructs parallel tumor evolution Lennart Kester, Buys de Barbanson, Anna Lyubimova, Li-Ting Chen, Valérie van der Schrier, Anna Alemany, Dylan Mooijman, Josi Peterson-Maduro, Jarno Drost, Jeroen de Ridder, Alexander van Oudenaarden
Cell Genomics, 2022, Volume 2, Issue 2, 9 100096
DOI:10.1016/j.xgen.2022.100096

Molecular characterization of Barrett’s esophagus at single-cell resolution Georg A. Busslinger, Buys de Barbanson, Rurika Oka, Bas L. A. Weusten, Michiel de Maat, Richard van Hillegersberg, Lodewijk A. A. Brosens, Ruben van Boxtel, Alexander van Oudenaarden, Hans Clevers
Proceedings of the National Academy of Sciences, 2021, 118 (47) e2113061118;
DOI: 10.1073/pnas.2113061118

Sequencing metabolically labeled transcripts in single cells reveals mRNA turnover strategies Nico Battich, Joep Beumer, Buys de Barbanson, Lenno Krenning, Chloé S. Baron, Marvin E. Tanenbaum, Hans Clevers, Alexander van Oudenaarden
Science 367(6482):1151-1156 (2020) DOI: 10.1126/science.aax3072

Snake Venom Gland Organoids Yorick Post, Jens Puschhof, Joep Beumer, Harald M. Kerkkamp, Merijn A.G. de Bakker, Julien Slagboom, Buys de Barbanson [..] Alexander van Oudenaarden [..] Hans Clevers
Cell, Volume 180, Issue 2, 2020 DOI: 10.1016/j.cell.2019.11.038

Three-dimensional analysis of single molecule FISH in human colon organoids Manja Omerzu, Nicola Fenderico, Buys de Barbanson, Joep Sprangers, Jeroen de Ridder, Madelon M Maurice
Biology Open 8:bio.042812 2019 DOI:10.1242/bio.042812